checkPEReads_old: Check if both mate pairs are consistent with backsplice...
In KasperThystrup/circulaR: Characterization of circRNAs from Total RNA-seq data
Description
Usage
Arguments
Value
Examples
View source: R/chimeric_data_manipulation.r
Description
Deprecated function; not particularly intuitive
Usage
1
checkPEReads_old(df = NULL, endTol = 5)
Arguments
df
Path to a SJ.out.tab file or a data.frame.
endTol
How many nucleotides on the "wrong" side of the junction can be tolerated.
Value
data.frame with added column of boolean values indicating whether read pair is OK.
Examples
1
bsj.data <- checkPEreads(df = chi.data)
KasperThystrup/circulaR documentation built on March 14, 2021, 12:44 p.m.
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Description Usage Arguments Value Examples
View source: R/chimeric_data_manipulation.r
Description
Deprecated function; not particularly intuitive
Usage
1 | checkPEReads_old(df = NULL, endTol = 5)
|
Arguments
df |
Path to a SJ.out.tab file or a data.frame. |
endTol |
How many nucleotides on the "wrong" side of the junction can be tolerated. |
Value
data.frame with added column of boolean values indicating whether read pair is OK.
Examples
1 | bsj.data <- checkPEreads(df = chi.data)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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