addKnownJunctions: Function to add information on annotated junctions and...
In KasperThystrup/circulaR: Characterization of circRNAs from Total RNA-seq data

Description Usage Arguments Value Examples

This function takes a table of candidate backspliced reads and finds the closest known junction.

1	addKnownJunctions(cbs, kj)

`cbs`	Table of candidate backspliced reads (produced by getCandidateBackspliceSites).
`kj`	GRanges object of known junctions (produced by constructSJDB).

Table of candidate backspliced reads with information on closest donor and acceptor.

## Not run: 
# Build database of known junctions
ah <- AnnotationHub()
ahdb <- query(ah, pattern = c("Homo Sapiens", "EnsDb", 92))[[1]]
sjdb <- constructSJDB(txdb)

df <- readChimFile(file = "~/projects/circulaR/misc/sub.Chimeric.out.junction") ## Replace with 'data(ExampleJunctions)'
df <- addKnownJunctions(cbs = df, kj = sjdb)

## End(Not run)