API for LihuaJulieZhu/CRISPRseek
Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems
| Global functions | |
|---|---|
| .compute_pair_index | Source code |
| .compute_pair_index2 | Source code |
| .compute_pair_index3 | Source code |
| .getSeq | Source code |
| .getgRNA.cut.sites | Source code |
| .mismatches_as_IntegerList | Source code Source code Source code |
| .preprocess_me2 | Source code |
| .searchHitsInOneSeq2 | Source code |
| .searchHitsInOneSeq3 | Source code |
| .updateScore | Source code |
| CRISPRseek | Man page |
| CRISPRseek-package | Man page |
| annotateOffTargets | Man page Source code |
| buildFeatureVectorForScoring | Man page Source code |
| buildFeatureVectorForScoring2 | Source code |
| buildFeatureVectorForScoringBulge | Source code |
| calculategRNAEfficiency | Man page Source code |
| calculategRNAEfficiency2 | Source code |
| calculategRNAEfficiencyCRISPRscan | Source code |
| compare2Sequences | Man page Source code |
| deepCpf1 | Man page Source code |
| designPEs | Source code |
| filterOffTarget | Man page Source code |
| filtergRNAs | Man page Source code |
| findgRNAs | Man page |
| getExtendedSequence | Source code |
| getOfftargetScore | Man page Source code |
| getOfftargetScore2 | Source code |
| getOfftargetScoreBulge | Source code |
| getSeqFromBed | Source code |
| isPatternUnique | Man page Source code |
| offTargetAnalysis | Man page Source code |
| offTargetAnalysisWithoutBSgenome | Man page Source code |
| predictRelativeFreqIndels | Man page Source code |
| searchHits | Man page |
| searchHits2 | Man page |
| translatePattern | Man page Source code |
| uniqueREs | Man page Source code |
| writeHits | Man page |
| writeHits2 | Man page |
