API for Linlab-slu/TSSr
TSS sequencing data analysis
| Global functions | |
|---|---|
| .Ds | Source code |
| .assign2gene | Source code |
| .clusterByPeak | Source code |
| .deseq2 | Source code |
| .filterWithPoisson | Source code Source code |
| .getBed | Source code |
| .getConsensus | Source code |
| .getConsensusQuantile | Source code |
| .getGenome | Source code |
| .getTSS_from_BigWig | Source code |
| .getTSS_from_TSStable | Source code |
| .getTSS_from_bam | Source code |
| .getTSS_from_bed | Source code |
| .getTSS_from_tss | Source code |
| .plotCorrelation | Source code |
| .plotTSS | Source code |
| .removeNewG | Source code |
| .tagCount | Source code |
| .tagCount_updated | Source code |
| TSSr-class | Man page |
| TSSr-package | Man page |
| annotateCluster | Man page |
| annotateCluster,TSSr-method | Man page |
| callEnhancer | Man page |
| callEnhancer,TSSr-method | Man page |
| clusterTSS | Man page |
| clusterTSS,TSSr-method | Man page |
| consensusCluster | Man page |
| consensusCluster,TSSr-method | Man page |
| deGene | Man page |
| deGene,TSSr-method | Man page |
| exampleTSSr | Man page |
| exportClustersTable | Man page |
| exportClustersTable,TSSr-method | Man page |
| exportClustersToBed | Man page |
| exportClustersToBed,TSSr-method | Man page |
| exportDETable | Man page |
| exportDETable,TSSr-method | Man page |
| exportEnhancerTable | Man page |
| exportEnhancerTable,TSSr-method | Man page |
| exportShapeTable | Man page |
| exportShapeTable,TSSr-method | Man page |
| exportShiftTable | Man page |
| exportShiftTable,TSSr-method | Man page |
| exportTSStable | Man page |
| exportTSStable,TSSr-method | Man page |
| exportTSStoBedgraph | Man page |
| exportTSStoBedgraph,TSSr-method | Man page |
| filterTSS | Man page |
| filterTSS,TSSr-method | Man page |
| getTSS | Man page |
| getTSS,TSSr-method | Man page |
| mergeSamples | Man page |
| mergeSamples,TSSr-method | Man page |
| normalizeTSS | Man page |
| normalizeTSS,TSSr-method | Man page |
| plotCorrelation | Man page |
| plotCorrelation,TSSr-method | Man page |
| plotDE | Man page |
| plotDE,TSSr-method | Man page |
| plotInterQuantile | Man page |
| plotInterQuantile,TSSr-method | Man page |
| plotShape | Man page |
| plotShape,TSSr-method | Man page |
| plotTSS | Man page |
| plotTSS,TSSr-method | Man page |
| plotTssPCA | Man page |
| plotTssPCA,TSSr-method | Man page |
| shapeCluster | Man page |
| shapeCluster,TSSr-method | Man page |
| shiftPromoter | Man page |
| shiftPromoter,TSSr-method | Man page |
