consensusCluster: Make consensus clusters across multiple samples.

In Linlab-slu/TSSr: TSS sequencing data analysis

Make consensus clusters across multiple samples.

Description

Makes consensus clusters from multiple samples in TSSr object and calculates inter-quantile positions within consensus clusters for each sample.

Usage

consensusCluster(object, dis = 50
, useMultiCore=FALSE, numCores = NULL)

## S4 method for signature 'TSSr'
consensusCluster(object, dis = 50, useMultiCore = FALSE, numCores = NULL)

Arguments

object	A TSSr object.
dis	Minimum distance between two peaks to be aggregated together into the same consensus cluster.
useMultiCore	Logical indicating whether multiple cores are used (TRUE) or not (FALSE). Default is FALSE.
numCores	Number of cores are used in clustering step. Used only if useMultiCore = TRUE. Default is NULL.

Value

Large List of elements - one element for each sample

Examples

data(exampleTSSr)
consensusCluster(exampleTSSr,useMultiCore=FALSE)

Linlab-slu/TSSr documentation built on Oct. 23, 2024, 8:31 p.m.