shiftPromoter: Select genes which have core promoter shift across different...

Description Usage Arguments Examples

Description

Selects genes which have multiple core promoters and undergo core promoter shifting across different experiments. Generates gene list with Ds (degree of shift) value (Lu et al., 2019), p value and adjusted p value.

Usage

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shiftPromoter(object, comparePairs, pval=0.01)

## S4 method for signature 'TSSr'
shiftPromoter(object, comparePairs, pval = 0.01)

Arguments

object

A TSSr object.

comparePairs

Specified list of sample pairs for comparison.

pval

Genes with adjusted p value >= pval will be returned. Default value = 0.01.

Examples

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shiftPromoter(exampleTSSr,comparePairs=list(c("control","treat")), pval = 0.01)

Linlab-slu/TSSr documentation built on July 28, 2021, 12:59 a.m.