plotTssPCA: Plotting principle component analysis (PCA)

In Linlab-slu/TSSr: TSS sequencing data analysis

Plotting principle component analysis (PCA)

Description

Calculates principle component analysis (PCA) of all samples and creates a biplot which includes the position of each sample in terms of PC1 and PC2.

Usage

plotTssPCA(object, TSS.threshold =10)

## S4 method for signature 'TSSr'
plotTssPCA(object, TSS.threshold = 10)

Arguments

object	A TSSr object.
TSS.threshold	Only TSSs with raw signal >= TSS.threshold will be included in PCA analysis

Value

PCA plotted in a graph

Examples

data(exampleTSSr)
#plotTssPCA(exampleTSSr)

Linlab-slu/TSSr documentation built on Oct. 23, 2024, 8:31 p.m.