exportTSStoBedgraph: Creating Bedgraph/BigWig tracks of TSSs

In Linlab-slu/TSSr: TSS sequencing data analysis

Creating Bedgraph/BigWig tracks of TSSs

Description

Creates bedGraph/BigWig files of TSSs that can be visualized in the UCSC Genome Browser and Integrative Genomics Viewer (IGV).

Usage

exportTSStoBedgraph(object, data = "processed", format = "bedGraph",oneFile = FALSE)

## S4 method for signature 'TSSr'
exportTSStoBedgraph(
  object,
  data = "processed",
  format = "bedGraph",
  oneFile = FALSE
)

Arguments

object	A TSSr object.
data	Specify which data will be exported: "raw" or "processed". Default is "processed".
format	The format of output files: "bedGraph" or "BigWig". Default is "bedGraph".
oneFile	Logical, specify whether to export individual TSS tracks into the one bedGraph file (TRUE) of in separate bedGraph files (FALSE).

Value

Bedgraph/BigWig tracks of TSSs

Examples

data(exampleTSSr)
#exportTSStoBedgraph(exampleTSSr, data = "processed", format = "bedGraph")

Linlab-slu/TSSr documentation built on Oct. 24, 2023, 8:32 p.m.