getTSS: Precisely identify TSSs from bam files, paired end bam files,...

Description Usage Arguments Examples

Description

getTSS function is used to precisely identify TSSs from multiple input file formats. The files include users' home-made alignment files (bam format) or downloaded files from public databases. See inputFilesType for details on the supported input file formats.

Usage

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getTSS(object, sequencingQualityThreshold = 10, mappingQualityThreshold = 20)

## S4 method for signature 'TSSr'
getTSS(object, sequencingQualityThreshold = 10, mappingQualityThreshold = 20)

Arguments

object

A TSSr object.

sequencingQualityThreshold

Used only if inputFilesType == "bam" or "bamPairedEnd", otherwise ignored.

mappingQualityThreshold

Used only if inputFilesType == "bam" or "bamPairedEnd", otherwise ignored.

Examples

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Linlab-slu/TSSr documentation built on July 28, 2021, 12:59 a.m.