API for Linlab-slu/TSSr
TSS sequencing data analysis

Global functions
.Ds Source code
.assign2gene Source code
.clusterByPeak Source code
.deseq2 Source code
.filterWithPoisson Source code Source code
.getBed Source code
.getConsensus Source code
.getConsensusQuantile Source code
.getGenome Source code
.getTSS_from_BigWig Source code
.getTSS_from_TSStable Source code
.getTSS_from_bam Source code
.getTSS_from_bed Source code
.getTSS_from_tss Source code
.plotCorrelation Source code
.plotTSS Source code
.removeNewG Source code
.tagCount Source code
.tagCount_updated Source code
TSSr-class Man page
TSSr-package Man page
annotateCluster Man page
annotateCluster,TSSr-method Man page
clusterTSS Man page
clusterTSS,TSSr-method Man page
consensusCluster Man page
consensusCluster,TSSr-method Man page
deGene Man page
deGene,TSSr-method Man page
exampleTSSr Man page
exportClustersTable Man page
exportClustersTable,TSSr-method Man page
exportClustersToBed Man page
exportClustersToBed,TSSr-method Man page
exportDETable Man page
exportDETable,TSSr-method Man page
exportShapeTable Man page
exportShapeTable,TSSr-method Man page
exportShiftTable Man page
exportShiftTable,TSSr-method Man page
exportTSStable Man page
exportTSStable,TSSr-method Man page
exportTSStoBedgraph Man page
exportTSStoBedgraph,TSSr-method Man page
filterTSS Man page
filterTSS,TSSr-method Man page
getTSS Man page
getTSS,TSSr-method Man page
mergeSamples Man page
mergeSamples,TSSr-method Man page
normalizeTSS Man page
normalizeTSS,TSSr-method Man page
plotCorrelation Man page
plotCorrelation,TSSr-method Man page
plotDE Man page
plotDE,TSSr-method Man page
plotInterQuantile Man page
plotInterQuantile,TSSr-method Man page
plotShape Man page
plotShape,TSSr-method Man page
plotTSS Man page
plotTSS,TSSr-method Man page
plotTssPCA Man page
plotTssPCA,TSSr-method Man page
shapeCluster Man page
shapeCluster,TSSr-method Man page
shiftPromoter Man page
shiftPromoter,TSSr-method Man page
Linlab-slu/TSSr documentation built on July 28, 2021, 12:59 a.m.