callEnhancer: Identification of enhancers

In Linlab-slu/TSSr: TSS sequencing data analysis

Identification of enhancers

Description

Calculates enhancer candidates, which are characterized by bidirectional clusters as described in Andersson et al. 2014.

Usage

callEnhancer(object, flanking = 400, dis2gene = 2000)

## S4 method for signature 'TSSr'
callEnhancer(object, flanking = 400, dis2gene = 2000)

Arguments

object	A TSSr object.
flanking	The flanking region range where bidirectional clusters composing a enhancer candidate. Default is 400.
dis2gene	The minimum distance to the main annotated core promoter of genes. Default is 2000.

Value

Large List of elements - one element for each sample

Examples

data(exampleTSSr)
#callEnhancer(exampleTSSr,flanking = 400,dis2gene=2000)

Linlab-slu/TSSr documentation built on Oct. 23, 2024, 8:31 p.m.