sc_mae_plot_umap: Generates UMAP of multiomic data
In LuyiTian/scPipe: Pipeline for single cell multi-omic data pre-processing
sc_mae_plot_umap R Documentation
Generates UMAP of multiomic data
Description
Uses feature count data from multiple experiment objects to produce UMAPs for each assay and then overlay them on the same pair of axes
Usage
sc_mae_plot_umap(mae, by = NULL, output_file = NULL)
Arguments
mae
The MultiAssayExperiment object
by
What to colour the points by. Needs to be in colData of all experiments.
output_file
The path of the output file
Value
A ggplot2 object representing the UMAP plot
LuyiTian/scPipe documentation built on Dec. 11, 2023, 8:21 p.m.
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| sc_mae_plot_umap | R Documentation |
Generates UMAP of multiomic data
Description
Uses feature count data from multiple experiment objects to produce UMAPs for each assay and then overlay them on the same pair of axes
Usage
sc_mae_plot_umap(mae, by = NULL, output_file = NULL)
Arguments
mae |
The MultiAssayExperiment object |
by |
What to colour the points by. Needs to be in colData of all experiments. |
output_file |
The path of the output file |
Value
A ggplot2 object representing the UMAP plot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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