MPIIComputationalEpigenetics/WSHPackage: R package for the calculation of the following Within-Sample Heterogeneity Scores in Bisulfite Sequencing Data: FDRP, qFDRP, PDR, Epipolymorphism, Methylation Entropy and MHL

R package for the calculation of the following Within-Sample Heterogeneity Scores in Bisulfite Sequencing Data: Fraction of Discordant Read Pairs (FDRP), quantitative FDRP (qFDRP), Proportion of Discordant Reads (PDR, Landau et.al. (2014), Cancer Cell ), Epipolymorphism (Landan et.al. (2012), Nature Genetics), Methylation Entropy (Xie et.al. (2011), Nucleic Acids Research) and Methylation Haplotype Load (MHL, Guo et.al. (2017), Nature Genetics)

Getting started

Package details

AuthorMichael Scherer
MaintainerMichael Scherer <mscherer@mpi-inf.mpg.de>
LicenseGPL-3
Version0.1.4
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("MPIIComputationalEpigenetics/WSHPackage")
MPIIComputationalEpigenetics/WSHPackage documentation built on July 22, 2020, 4:07 p.m.