calculate.epipolymorphism: calculate.epipolymorphism

Description Usage Arguments Value

View source: R/calculate_scores.R

Description

This function calculates Epipolymorphism by calling the methclone software to compute epiallele frequencies and then uses the definition of epipolymorphism for the calculation.

Usage

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calculate.epipolymorphism(
  bam.file,
  out.folder = getwd(),
  out.name = "methclone"
)

Arguments

bam.file

path to bam file containing the reads of the data set

out.folder

folder to store the temporary file produced by methclone

out.name

name of temporary file

Value

a data frame containing the position in the reference genome and the Epipolymorphism scores


MPIIComputationalEpigenetics/WSHPackage documentation built on Oct. 22, 2021, 2:07 p.m.