create.genomebrowser.track: create.genomebrowser.track

In MPIIComputationalEpigenetics/WSHPackage: R package for the calculation of the following Within-Sample Heterogeneity Scores in Bisulfite Sequencing Data: FDRP, qFDRP, PDR, Epipolymorphism, Methylation Entropy and MHL

Description

Converts the output of compute.score und compute.score.GRanges into genome browser tracks, that can be directly imported into e.g. UCSC Genome Browser.

Usage

create.genomebrowser.track(
  score.output,
  sample.name = "Sample",
  store.path = getwd(),
  bin.width = 5000
)

Arguments

score.output	The output as generated through compute.score or compute.score.GRanges: a data.frame with chromosome positions and the score values for those positions.
sample.name	The name of the sample to be added to the file.
store.path	The path to which the file is to be stored.
bin.width	Width of bins in bp to aggregate the scores. If NULL, the scores are stored as single CpGs.

Author(s)

Michael Scherer

MPIIComputationalEpigenetics/WSHPackage documentation built on Dec. 14, 2021, 11:49 a.m.