calculate.entropy: calculate.entropy

Description Usage Arguments Value

View source: R/calculate_scores.R

Description

This function calculates Methylation entropy by calling the methclone software to compute epiallele frequencies and then uses the definition of entropy for the calculation.

Usage

1
calculate.entropy(bam.file, out.folder = getwd(), out.name = "methclone")

Arguments

bam.file

path to bam file containing the reads of the data set

out.folder

folder to store the temporary file produced by methclone

out.name

name of temporary file

Value

a data frame containing the position in the reference genome and the Entropy scores


MPIIComputationalEpigenetics/WSHPackage documentation built on Oct. 22, 2021, 2:07 p.m.