Man pages for MPIIComputationalEpigenetics/WSHPackage
R package for the calculation of the following Within-Sample Heterogeneity Scores in Bisulfite Sequencing Data: FDRP, qFDRP, PDR, Epipolymorphism, Methylation Entropy and MHL

calculate.entropycalculate.entropy
calculate.epipolymorphismcalculate.epipolymorphism
calculate.fdrpcalculate.fdrp
calculate.fdrp.by.chromosomecalculate.fdrp.by.chromosome This function calculates the...
calculate.fdrp.scorecalculate.fdrp.score
calculate.fdrp.sitecalculate.fdrp.site This function compute the FDRP score for...
calculate.mhlcalculate.mhl
calculate.pdrcalculate.pdr
calculate.pdr.by.chromosomecalculate.pdr.by.chromosome
calculate.pdr.sitecalculate.pdr.site This function computes the PDR score for a...
calculate.qfdrpcalculate.qfdrp
compute.scorecompute.score
compute.score.GRangescompute.score.GRanges
compute.score.rnbcompute.score.rnb
create.genomebrowser.trackcreate.genomebrowser.track
get.optionget.option Print the value of the global option
rnb.calculate.fdrprnb.calculate.fdrp
rnb.calculate.mhlrnb.calculate.mhl
rnb.calculate.pdrrnb.calculate.pdr
rnb.calculate.qfdrprnb.calculate.qfdrp
run.haplotype.calculationrun.haplotype.calculation
run.methclonerun.methclone
run.mhl.calculationrun.mhl.calculation
set.optionset.option
VALID.SCORESmain.R
wsh.run.examplewsh.run.example
MPIIComputationalEpigenetics/WSHPackage documentation built on July 22, 2020, 4:07 p.m.