run.haplotype.calculation: run.haplotype.calculation
In MPIIComputationalEpigenetics/WSHPackage: R package for the calculation of the following Within-Sample Heterogeneity Scores in Bisulfite Sequencing Data: FDRP, qFDRP, PDR, Epipolymorphism, Methylation Entropy and MHL
Description
Usage
Arguments
Author(s)
Description
Runs the haplotype calculation associated with MHL's publication
Usage
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run.haplotype.calculation(
roi,
bam.file,
out.folder = getwd(),
out.name = "hapinfo.txt",
bam.type = "bismark"
)
Arguments
roi
Region of interest for which haplotype information should be computed
bam.file
path to bam file containing the reads
out.folder
folder to write the output
out.name
name of the output file
bam.type
alignment tools used to create the bam file
Author(s)
Michael Scherer
MPIIComputationalEpigenetics/WSHPackage documentation built on Dec. 14, 2021, 11:49 a.m.
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Description Usage Arguments Author(s)
Description
Runs the haplotype calculation associated with MHL's publication
Usage
1 2 3 4 5 6 7 | run.haplotype.calculation(
roi,
bam.file,
out.folder = getwd(),
out.name = "hapinfo.txt",
bam.type = "bismark"
)
|
Arguments
roi |
Region of interest for which haplotype information should be computed |
bam.file |
path to bam file containing the reads |
out.folder |
folder to write the output |
out.name |
name of the output file |
bam.type |
alignment tools used to create the bam file |
Author(s)
Michael Scherer
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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