run.haplotype.calculation: run.haplotype.calculation

Description Usage Arguments Author(s)

View source: R/run_tools.R

Description

Runs the haplotype calculation associated with MHL's publication

Usage

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run.haplotype.calculation(
  roi,
  bam.file,
  out.folder = getwd(),
  out.name = "hapinfo.txt",
  bam.type = "bismark"
)

Arguments

roi

Region of interest for which haplotype information should be computed

bam.file

path to bam file containing the reads

out.folder

folder to write the output

out.name

name of the output file

bam.type

alignment tools used to create the bam file

Author(s)

Michael Scherer


MPIIComputationalEpigenetics/WSHPackage documentation built on Oct. 22, 2021, 2:07 p.m.