rnb.calculate.mhl: rnb.calculate.mhl
In MPIIComputationalEpigenetics/WSHPackage: R package for the calculation of the following Within-Sample Heterogeneity Scores in Bisulfite Sequencing Data: FDRP, qFDRP, PDR, Epipolymorphism, Methylation Entropy and MHL
Description
Usage
Arguments
Value
View source: R/connect_RnBeads.R
Description
This function calculates the MHL scores for a given RnBSet and a bam file containing the reads.
Usage
1
rnb.calculate.mhl(rnb.set, bam.path, roi.path = getwd())
Arguments
rnb.set
RnBSet object containing the CpG sites for which calculation should be conducted
bam.path
path to the bam file containing the reads
roi.path
path to a directory to which output can be added
Value
MHL scores for the CpG sites in the RnBSet with a higher coverage than COVERAGE.THRESHOLD
MPIIComputationalEpigenetics/WSHPackage documentation built on Dec. 14, 2021, 11:49 a.m.
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Description Usage Arguments Value
View source: R/connect_RnBeads.R
Description
This function calculates the MHL scores for a given RnBSet and a bam file containing the reads.
Usage
1 | rnb.calculate.mhl(rnb.set, bam.path, roi.path = getwd())
|
Arguments
rnb.set |
RnBSet object containing the CpG sites for which calculation should be conducted |
bam.path |
path to the bam file containing the reads |
roi.path |
path to a directory to which output can be added |
Value
MHL scores for the CpG sites in the RnBSet with a higher coverage than COVERAGE.THRESHOLD
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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