rnb.calculate.mhl: rnb.calculate.mhl

Description Usage Arguments Value

View source: R/connect_RnBeads.R

Description

This function calculates the MHL scores for a given RnBSet and a bam file containing the reads.

Usage

1
rnb.calculate.mhl(rnb.set, bam.path, roi.path = getwd())

Arguments

rnb.set

RnBSet object containing the CpG sites for which calculation should be conducted

bam.path

path to the bam file containing the reads

roi.path

path to a directory to which output can be added

Value

MHL scores for the CpG sites in the RnBSet with a higher coverage than COVERAGE.THRESHOLD


MPIIComputationalEpigenetics/WSHPackage documentation built on Oct. 22, 2021, 2:07 p.m.