Man pages for Mathelab/RaMP-DB
RaMP (Relational Database of Metabolomic Pathways)

connectToRaMPConnect to RaMP database (requires mysql password when...
FilterFishersResultsFilter pathways by p-value cutoff for display and clustering
find_clustersPerform fuzzy multiple linkage partitioning clustering on...
killDbConnectionsKill all databases connection.
rampCataOutThe function send query to databases to find synonym
rampFastCataReturn analytes that has catalyzation relation with given...
rampFastMetaFromPathUse fast search algorithm to find all pathways from given...
rampFastMetaFromPath_InputFileGenerate data.frame that has all search results from given...
rampFastPathFromMetaFunction that search analytes (gene or compounds) or a list...
rampFastPathFromSourceFast search given a list of metabolites source Id
rampFileOfAnalytes_tab4Generate data.frame from given files
rampFileOfPathwaysGenerate data.frame from given files
rampFindSourceFromIdFind all source from given list of RaMP Ids
rampFindSourceRampIdFind rampId from given source ID The rampId can be plugged in...
rampFindSynonymFromSynonymFind all synonym from a given metabolite's name This function...
rampGenerateBarPlotReformat the result of query (get pathways from analyte(s))...
rampGenesFromCompSend query to databases to get metabolites
rampHcOutputhighchart output for RaMP and fisher test.
rampImportDumpFileImport RaMP database automatically from dump file that is...
rampKWsearchThe function does key word search from given synonym on...
rampNameFromPathSend query to databases to get metabolites
rampOntoOutThe function send query to databases to find ontology or...
rampPathFromMetaSend query to database that find pathway
runFisherTestDo fisher test for only one pathway from search result...
runRaMPappRun Shiny App
Mathelab/RaMP-DB documentation built on Jan. 15, 2018, 7:04 a.m.