compute_overlap_matrix: Compute overlaping matrix based on given list return by...
In Mathelab/RaMP-DB: RaMP (Relational Database of Metabolomic Pathways)
Description
Usage
Arguments
Value
View source: R/processNewRamp.R
Description
Compute overlaping matrix based on given list return by findAnalyteHasPathway()
Usage
1
compute_overlap_matrix(pathwayid, pathwaysWithAnalytes, overlapmethod)
Arguments
pathwayid
a vector that has all ramp pathway id in the pathwaysWithAnalytes
pathwaysWithAnalytes
a list that has pathways ramp Id as name, analytes (ramp compound id only
or gene id only or both) as content. Return by findAnalyteHasPathway
overlapmethod
must be in c('balanced','weighted') to determine which way to calculate this matrix
Value
the overlap matrix that has the overlap
Mathelab/RaMP-DB documentation built on April 24, 2021, 3:11 p.m.
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Description Usage Arguments Value
View source: R/processNewRamp.R
Description
Compute overlaping matrix based on given list return by findAnalyteHasPathway()
Usage
1 | compute_overlap_matrix(pathwayid, pathwaysWithAnalytes, overlapmethod)
|
Arguments
pathwayid |
a vector that has all ramp pathway id in the pathwaysWithAnalytes |
pathwaysWithAnalytes |
a list that has pathways ramp Id as name, analytes (ramp compound id only or gene id only or both) as content. Return by findAnalyteHasPathway |
overlapmethod |
must be in c('balanced','weighted') to determine which way to calculate this matrix |
Value
the overlap matrix that has the overlap
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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