View source: R/processNewRamp.R
Update the overlap matrix for store in the shiny app directory
1 2 | updateOverlapMatrix(min_analyte, overlapmethod, together, conpass,
host = "localhost", dbname = "ramp", username = "root")
|
min_analyte |
a int that specifies the minimum of analytes the pathway should have to be considered compute for overlap matrix |
overlapmethod |
a string that specifies the way to compute overlap matrix, must be 'balanced' or 'weighted' |
together |
a boolean value to compute overlap matrix for gene/metabolites separatly or together |
conpass |
a string that specifies password for database connection |
host |
a string that specifes host for database connection |
dbname |
a string that specifies database name of MySQL database |
username |
a string that specifies name of MySQL database |
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