FilterFishersResults: Filter pathways by p-value cutoff for display and clustering
In Mathelab/RaMP-DB: RaMP (Relational Database of Metabolomic Pathways)

Description Usage Arguments Value Examples

Filter pathways by p-value cutoff for display and clustering

1 2	FilterFishersResults(fishers_df, p_holmadj_cutoff = NULL, p_fdradj_cutoff = NULL)

`fishers_df`	The data frame generated by runFisherTest
`p_holmadj_cutoff`	return pathways where Holm adjusted pvalues are < p_holmadj_cutoff
`p_fdradj_cutoff`	return pathways where FDR adjusted pvalues are < p_fdradj_cutoff

list:[[1]]Dataframe with pathway enrichment results, only significant pathways [[2]]analyte type

## Not run: 
pathwaydf<-getPathwayFromAnalyte(c("MDM2","TP53","glutamate","creatinine"),
                NameOrIds="names", conpass=conpass)
fisher.results <- runCombinedFisherTest(pathwaydf=pathwaydf,conpass=conpass)
filtered.fisher.results <- FilterFishersResults(fisher.results,p_holmadj_cutoff=0.05)

## End(Not run)