processData: processData function generates pathway RampId frequency (gene...

In Mathelab/RaMP-DB: RaMP (Relational Database of Metabolomic Pathways)

Description

processData function generates pathway RampId frequency (gene or metabolite) based on pathway source (hmdb,kegg,reactome,wiki)

Usage

processData(conpass, dbname = "ramp", username = "root",
  host = "localhost")

Arguments

conpass	a string that specifies password for database connection
dbname	a string that specifies database name of MySQL database
username	a string that specifies name of MySQL database
host	a string that specifes host for database connection

Value

R object (FT_data.Rdata) with dataframes (hmdb_metab,hmdb_gene,kegg_gene,kegg_metab,reactome_gene,reactome_metab,wiki_gene,wiki_metab)

Mathelab/RaMP-DB documentation built on April 24, 2021, 3:11 p.m.