findAnalyteHasPathway: Find table of analyte has pathway from given pathway IDs...

In Mathelab/RaMP-DB: RaMP (Relational Database of Metabolomic Pathways)

Description

Find table of analyte has pathway from given pathway IDs Aggregate ramp Id to ramp pathway Id GC is C or G

Usage

findAnalyteHasPathway(pathwayRampId, GC = "C", n = 10,
  username = "root", dbname = "ramp", conpass, host = "localhost")

Arguments

pathwayRampId	a vector of ramp Pathway ID
GC	the analytes type that is either "C" for compound or "G" for gene
n	minimum analytes of which pathway to considered computing overlap
username	a string that specifies name of MySQL database
dbname	a string that specifies database name of MySQL database
conpass	a string that specifies password for database connection
host	a string that specifes host for database connection

Value

A list with pathway rampID as name, a vector of analytes from this pathway as content.

Mathelab/RaMP-DB documentation built on April 24, 2021, 3:11 p.m.