NCBI-Hackathons/RClusterCT: Classifier for Single-cell RNA-seq Using Cell Clusters

Package designed to aid in classifying cells from single-cell RNA sequencing data using external reference data (e.g., bulk RNA-seq, scRNA-seq, microarray, gene lists). A variety of correlation based methods and gene list enrichment methods are provided to assist cell type assignment.

Getting started

Package details

Bioconductor views Annotation GeneExpression Microarray Sequencing SingleCell
Maintainer
LicenseMIT + file LICENSE
Version1.5.0
URL http://github.com/rnabioco/clustifyr#readme https://rnabioco.github.io/clustifyr/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("NCBI-Hackathons/RClusterCT")
NCBI-Hackathons/RClusterCT documentation built on June 5, 2021, 8:25 p.m.