cor_to_call_rank | R Documentation |
get ranked calls for each cluster
cor_to_call_rank( cor_mat, metadata = NULL, cluster_col = "cluster", collapse_to_cluster = FALSE, threshold = 0, rename_prefix = NULL, top_n = NULL )
cor_mat |
input similarity matrix |
metadata |
input metadata with tsne or umap coordinates and cluster ids |
cluster_col |
metadata column, can be cluster or cellid |
collapse_to_cluster |
if a column name is provided, takes the most frequent call of entire cluster to color in plot |
threshold |
minimum correlation coefficent cutoff for calling clusters |
rename_prefix |
prefix to add to type and r column names |
top_n |
the number of ranks to keep, the rest will be set to 100 |
dataframe of cluster, new ident, and r info
res <- clustify( input = pbmc_matrix_small, metadata = pbmc_meta, cluster_col = "classified", ref_mat = cbmc_ref ) cor_to_call_rank(res, threshold = "auto")
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