append_genes: Given a reference matrix and a list of genes, take the union...

In NCBI-Hackathons/RClusterCT: Classifier for Single-cell RNA-seq Using Cell Clusters

Given a reference matrix and a list of genes, take the union of all genes in vector and genes in reference matrix and insert zero counts for all remaining genes.

Description

Given a reference matrix and a list of genes, take the union of all genes in vector and genes in reference matrix and insert zero counts for all remaining genes.

Usage

append_genes(gene_vector, ref_matrix)

Arguments

gene_vector	char vector with gene names
ref_matrix	Reference matrix containing cell types vs. gene expression values

Value

Reference matrix with union of all genes

Examples

mat <- append_genes(
    gene_vector = human_genes_10x,
    ref_matrix = cbmc_ref
)

NCBI-Hackathons/RClusterCT documentation built on July 10, 2022, 6:18 a.m.