binarize_expr: Binarize scRNAseq data

In NCBI-Hackathons/RClusterCT: Classifier for Single-cell RNA-seq Using Cell Clusters

Binarize scRNAseq data

Description

Binarize scRNAseq data

Usage

binarize_expr(mat, n = 1000, cut = 0)

Arguments

mat	single-cell expression matrix
n	number of top expressing genes to keep
cut	cut off to set to 0

Value

matrix of 1s and 0s

Examples

pbmc_avg <- average_clusters(
    mat = pbmc_matrix_small,
    metadata = pbmc_meta,
    cluster_col = "classified"
)

mat <- binarize_expr(pbmc_avg)
mat[1:3, 1:3]

NCBI-Hackathons/RClusterCT documentation built on Aug. 30, 2024, 2:05 a.m.