check_raw_counts: Given a count matrix, determine if the matrix has been either...

In NCBI-Hackathons/RClusterCT: Classifier for Single-cell RNA-seq Using Cell Clusters

Given a count matrix, determine if the matrix has been either log-normalized, normalized, or contains raw counts

Description

Given a count matrix, determine if the matrix has been either log-normalized, normalized, or contains raw counts

Usage

check_raw_counts(counts_matrix, max_log_value = 50)

Arguments

counts_matrix	Count matrix containing scRNA-seq read data
max_log_value	Static value to determine if a matrix is normalized

Value

String either raw counts, log-normalized or normalized

Examples

check_raw_counts(pbmc_matrix_small)

NCBI-Hackathons/RClusterCT documentation built on Aug. 30, 2024, 2:05 a.m.