call_consensus: get concensus calls for a list of cor calls
In NCBI-Hackathons/RClusterCT: Classifier for Single-cell RNA-seq Using Cell Clusters
Description
Usage
Arguments
Value
Examples
Description
get concensus calls for a list of cor calls
Usage
1
call_consensus(list_of_res)
Arguments
list_of_res
list of call dataframes from cor_to_call_rank
Value
dataframe of cluster, new ident, and mean rank
Examples
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res <- clustify(
input = pbmc_matrix_small,
metadata = pbmc_meta,
cluster_col = "classified",
ref_mat = cbmc_ref
)
res2 <- cor_to_call_rank(res, threshold = "auto")
res3 <- cor_to_call_rank(res)
call_consensus(list(res2, res3))
NCBI-Hackathons/RClusterCT documentation built on July 20, 2021, 3:15 p.m.
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Description Usage Arguments Value Examples
Description
get concensus calls for a list of cor calls
Usage
1 | call_consensus(list_of_res)
|
Arguments
list_of_res |
list of call dataframes from cor_to_call_rank |
Value
dataframe of cluster, new ident, and mean rank
Examples
1 2 3 4 5 6 7 8 9 10 | res <- clustify(
input = pbmc_matrix_small,
metadata = pbmc_meta,
cluster_col = "classified",
ref_mat = cbmc_ref
)
res2 <- cor_to_call_rank(res, threshold = "auto")
res3 <- cor_to_call_rank(res)
call_consensus(list(res2, res3))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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