get_ucsc_reference: Build reference atlases from external UCSC cellbrowsers

View source: R/cellbrowsers.R

get_ucsc_referenceR Documentation

Build reference atlases from external UCSC cellbrowsers

Description

Build reference atlases from external UCSC cellbrowsers

Usage

get_ucsc_reference(cb_url, cluster_col, ...)

Arguments

cb_url

URL of cellbrowser dataset (e.g. http://cells.ucsc.edu/?ds=cortex-dev). Note that the URL must contain the ds=dataset-name suffix.

cluster_col

annotation field for summarizing gene expression (e.g. clustering, cell-type name, samples, etc.)

...

additional args passed to average_clusters

Value

reference matrix

Examples

## Not run: 
get_ucsc_reference(cb_url = "http://cells.ucsc.edu/?ds=kidney-atlas%2FFetal_Immune",
                   cluster_col = "celltype")

## End(Not run)

NCBI-Hackathons/RClusterCT documentation built on July 10, 2022, 6:18 a.m.