View source: R/seurat_wrapper.R
object_data | R Documentation |
Function to access object data
object_data(object, ...) ## S3 method for class 'Seurat' object_data(object, slot, n_genes = 1000, ...) ## S3 method for class 'SingleCellExperiment' object_data(object, slot, ...)
object |
object after tsne or umap projections and clustering |
... |
additional arguments |
slot |
data to access |
n_genes |
number of genes limit for Seurat variable genes, by default 1000, set to 0 to use all variable genes (generally not recommended) |
expression matrix, with genes as row names, and cell types as column names
mat <- object_data( object = s_small3, slot = "data" ) mat[1:3, 1:3] mat <- object_data( object = sce_small, slot = "data" ) mat[1:3, 1:3]
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