object_data: Function to access object data

View source: R/seurat_wrapper.R

object_dataR Documentation

Function to access object data

Description

Function to access object data

Usage

object_data(object, ...)

## S3 method for class 'Seurat'
object_data(object, slot, n_genes = 1000, ...)

## S3 method for class 'SingleCellExperiment'
object_data(object, slot, ...)

Arguments

object

object after tsne or umap projections and clustering

...

additional arguments

slot

data to access

n_genes

number of genes limit for Seurat variable genes, by default 1000, set to 0 to use all variable genes (generally not recommended)

Value

expression matrix, with genes as row names, and cell types as column names

Examples

mat <- object_data(
    object = s_small3,
    slot = "data"
)
mat[1:3, 1:3]
mat <- object_data(
    object = sce_small,
    slot = "data"
)
mat[1:3, 1:3]

NCBI-Hackathons/RClusterCT documentation built on July 10, 2022, 6:18 a.m.