API for NWhitener/benchmarking
Benchmarking Tools For Single Cell RNA Sequencing Datasets
| Global functions | |
|---|---|
| add_clustering_annotation | Man page Source code |
| add_duplicate_cells | Man page Source code |
| add_zero_variance_gene_counts | Man page Source code |
| annotate_datasets | Man page Source code |
| create_internal_cluster_validation_report | Man page Source code |
| create_metamorphic_testing_report | Man page Source code |
| describe_datasets | Man page Source code |
| download_data | Man page Source code |
| duplicate_datasets | Man page Source code |
| extract_common_genes | Man page Source code |
| extract_datasets | Man page Source code |
| filter_data | Man page Source code |
| flip_gene_counts | Man page Source code |
| get_number_clusters | Man page Source code |
| get_number_singletons | Man page Source code |
| load_data | Man page Source code |
| merge_datasets | Man page Source code |
| modify_gene_counts | Man page Source code |
| permute_columns | Man page Source code |
| permute_dataset_order | Man page Source code |
| permute_rows | Man page Source code |
| perturb_datasets | Man page Source code |
| plot_clusters | Man page Source code |
| run_ari | Man page Source code |
| run_cca | Man page Source code |
| run_cca_integration_workflow | Man page Source code |
| run_clustering_workflow | Man page Source code |
| run_dunn | Man page Source code |
| run_fastmnn | Man page Source code |
| run_fastmnn_integration_workflow | Man page Source code |
| run_harmony | Man page Source code |
| run_harmony_integration_workflow | Man page Source code |
| run_kmeans_clustering | Man page Source code |
| run_log | Man page Source code |
| run_metamorphic_test | Man page Source code |
| run_metamorphic_test_workflow | Man page Source code |
| run_pca | Man page Source code |
| run_sctransform | Man page Source code |
| run_sctransform_integration_workflow | Man page Source code |
| run_seurat_clustering | Man page Source code |
| run_silhouette | Man page Source code |
| run_tfidf | Man page Source code |
| run_tsne | Man page Source code |
| run_umap | Man page Source code |
| scale_data | Man page Source code |
| select_hvg | Man page Source code |
