select_hvg: Select Highly Variable Genes
In NWhitener/benchmarking: Benchmarking Tools For Single Cell RNA Sequencing Datasets
View source: R/preprocessing.R
select_hvg R Documentation
Select Highly Variable Genes
Description
This function uses the FindVariablesFeatures of Seurat to find the Highly variable genes of a data set. This function
assumes that genes are in rows and cells are in columns. The "vst" selection method is used with 2000 genes as a default.
Usage
select_hvg(dataList, numGenes = 2000)
Arguments
dataList
A list of data sets for finding HVG's
numGenes
The number fo HVG's to be found, defaults to 2000
Value
A data list of that includes the variable genes of the original data list
NWhitener/benchmarking documentation built on Oct. 23, 2023, 12:20 a.m.
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View source: R/preprocessing.R
| select_hvg | R Documentation |
Select Highly Variable Genes
Description
This function uses the FindVariablesFeatures of Seurat to find the Highly variable genes of a data set. This function assumes that genes are in rows and cells are in columns. The "vst" selection method is used with 2000 genes as a default.
Usage
select_hvg(dataList, numGenes = 2000)
Arguments
dataList |
A list of data sets for finding HVG's |
numGenes |
The number fo HVG's to be found, defaults to 2000 |
Value
A data list of that includes the variable genes of the original data list
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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