run_sctransform: Run sctransform

In NWhitener/benchmarking: Benchmarking Tools For Single Cell RNA Sequencing Datasets

Run sctransform

Description

This function runs the data integration protocol detailed in the Seurat "Using sctransform in Seurat" found at https://satijalab.org/seurat/articles/sctransform_vignette.html . This function completes the sctransform process on the datasets, using the first data set as a reference as described at https://satijalab.org/seurat/articles/integration_large_datasets.html. Use run_sctransform_workflow() for the entire workflow process

Usage

run_sctransform(dataList, numFeatures = 2000)

Arguments

dataList	A list of data sets to integrate using the sctransform protocol
numFeatures	The number of Features to use, defaults to 2000

Value

A data list of the combined data from the sctransform protocol

NWhitener/benchmarking documentation built on Oct. 23, 2023, 12:20 a.m.