plot_clusters: Visualization method for the Clustering Methods

In NWhitener/benchmarking: Benchmarking Tools For Single Cell RNA Sequencing Datasets

Visualization method for the Clustering Methods

Description

Produces a plot of the clustering, based on the dimensionality reduction method chosen. The plot is a Seurat DimPlot.

Usage

plot_clusters(
  data,
  method = "kmeans",
  reductionType = "pca",
  transformationType = "log"
)

Arguments

data	An individual data object that you want to visualize
method	The cluster method to use, defaults to Kmeans
reductionType	The dimensionality reduction method chosen, defaults to PCA
transformationType	The transformation type you would like to see appear in the title

NWhitener/benchmarking documentation built on Oct. 23, 2023, 12:20 a.m.