run_dunn: Run Dunn Index

In NWhitener/benchmarking: Benchmarking Tools For Single Cell RNA Sequencing Datasets

Run Dunn Index

Description

This function calculates the Dunn index of the clustering assignments made on the datasets provided. Uses the clusterCrit implementation of the Dunn Index

Usage

run_dunn(dataList, reductionType = "pca", method = "kmeans")

Arguments

dataList	a data list of the data with clustering assignments
reductionType	The dimensionality reduction type of the data to find the calculated scores, defaults to PCA
method	The clustering method used, defaults to Kmeans #' @return A table of the Dunn Index Scores, with the data set name and the score

NWhitener/benchmarking documentation built on Oct. 23, 2023, 12:20 a.m.