get_number_clusters: Get the number of clusters

In NWhitener/benchmarking: Benchmarking Tools For Single Cell RNA Sequencing Datasets

Get the number of clusters

Description

This functions finds the number of clusters in the Seurat Clustering method, or through the kmeans clustering method.

Usage

get_number_clusters(dataList, reductionType = "pca", method = "kmeans")

Arguments

dataList	A data list of data sets
reductionType	The type of dimensionly reduced data that should be used for clustering, defaults to PCA
method	The type of clustering, defaults to kmeans

Value

A list with the number of clusters

NWhitener/benchmarking documentation built on Oct. 23, 2023, 12:20 a.m.