create_internal_cluster_validation_report: Create Internal Cluster Validation Report

In NWhitener/benchmarking: Benchmarking Tools For Single Cell RNA Sequencing Datasets

Create Internal Cluster Validation Report

Description

This function creates an internal validation report for clustering methods. This report includes the Average Silhouette Width, as well as the Dunn Index as measures of Internal Validation. It also includes other useful information such as the Number of Clusters and the Number of Singletons.

Usage

create_internal_cluster_validation_report(dataList, method = "kmeans")

Arguments

dataList	A list of datasets with clustering completed
method	The type of clustering method to validate, defaults to kmeans

Value

A Internal Cluster Validation Report table with the Number of clusters, Average Silhouette Width, and Dunn Index as measures of validation

NWhitener/benchmarking documentation built on Oct. 23, 2023, 12:20 a.m.