run_metamorphic_test: Run metamorphic tests

In NWhitener/benchmarking: Benchmarking Tools For Single Cell RNA Sequencing Datasets

Run metamorphic tests

Description

This function runs the metamorphic test. It applies a perturbation and then clusters based on the method, transformation, and number of clusters supplied.

Usage

run_metamorphic_test(
  dataList,
  perturbationType = 1,
  method = "kmeans",
  transformationType = "log",
  seed = 1,
  numberClusters = 10
)

Arguments

dataList	A list of data sets
method	The clustering method to be used, defaults to Kmeans
transformationType	The type of data transformation to apply, defaults to log
seed	the seed to be set for reproducibility, defaults to 1
numberClusters	The number of cluster centers to use, defaults to 10

Value

A metamorphic results table

NWhitener/benchmarking documentation built on Oct. 23, 2023, 12:20 a.m.