Files in NWhitener/benchmarking
Benchmarking Tools For Single Cell RNA Sequencing Datasets
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/.gitignore
R/cluster.R
R/data.R
R/integration.R
R/preprocessing.R
R/report.R
R/research.R
R/validate.R
R/visualize.R
R/workflow.R
README.md
User_Example.R
inst/extdata/gene_counts_demo.RDS
man/add_clustering_annotation.Rd
man/add_duplicate_cells.Rd
man/add_zero_variance_gene_counts.Rd
man/annotate_datasets.Rd
man/create_internal_cluster_validation_report.Rd
man/create_metamorphic_testing_report.Rd
man/describe_datasets.Rd
man/download_data.Rd
man/duplicate_datasets.Rd
man/extract_common_genes.Rd
man/extract_datasets.Rd
man/filter_data.Rd
man/flip_gene_counts.Rd
man/get_number_clusters.Rd
man/get_number_singletons.Rd
man/load_data.Rd
man/merge_datasets.Rd
man/modify_gene_counts.Rd
man/permute_columns.Rd
man/permute_dataset_order.Rd
man/permute_rows.Rd
man/perturb_datasets.Rd
man/plot_clusters.Rd
man/run_ari.Rd
man/run_cca.Rd
man/run_cca_integration_workflow.Rd
man/run_clustering_workflow.Rd
man/run_dunn.Rd
man/run_fastmnn.Rd
man/run_fastmnn_integration_workflow.Rd
man/run_harmony.Rd
man/run_harmony_integration_workflow.Rd
man/run_kmeans_clustering.Rd
man/run_log.Rd
man/run_metamorphic_test.Rd
man/run_metamorphic_test_workflow.Rd
man/run_pca.Rd
man/run_sctransform.Rd
man/run_sctransform_integration_workflow.Rd
man/run_seurat_clustering.Rd
man/run_silhouette.Rd
man/run_tfidf.Rd
man/run_tsne.Rd
man/run_umap.Rd
man/scale_data.Rd
man/select_hvg.Rd
scrnabench.Rproj
