API for Nanostring-Biostats/SpatialOmicsOverlay
Spatial Overlay for Omic Data from Nanostring GeoMx Data

Global functions
.get_cache Source code
SpatialOverlay Man page
SpatialOverlay,character-method Man page
SpatialOverlay-class Man page
SpatialPosition Man page
SpatialPosition,data.frame-method Man page
SpatialPosition,environment-method Man page
SpatialPosition,matrix-method Man page
SpatialPosition,missing-method Man page
SpatialPosition-class Man page
add4ChannelImage Man page Source code
addImageFile Man page Source code
addImageOmeTiff Man page Source code
addPlottingFactor Man page
addPlottingFactor,NanoStringGeoMxSet-method Man page
addPlottingFactor,character-method Man page
addPlottingFactor,data.frame-method Man page
addPlottingFactor,factor-method Man page
addPlottingFactor,matrix-method Man page
addPlottingFactor,numeric-method Man page
addPlottingFactor,tbl-method Man page
addPlottingFactor,tbl_df-method Man page
annotMatching Man page Source code
bookendStr Man page Source code
boundary Source code
changeColoringIntensity Man page Source code
changeImageColoring Man page Source code
checkValidRes Man page Source code
class:SpatialOverlay Man page
class:SpatialPosition Man page
coords Man page
coords,SpatialOverlay-method Man page
coordsFromMask Source code
createCoordFile Man page Source code
createMask Man page Source code
crop Source code
cropSamples Man page Source code
cropTissue Man page Source code
decodeB64 Source code
downloadMouseBrainImage Man page Source code
flipX Man page Source code
flipY Man page Source code
fluor Man page
fluor,SpatialOverlay-method Man page
fluorData Source code
fluorLegend Man page Source code
imageColoring Source code
imageExtraction Source code
imageInfo Man page
imageInfo,SpatialOverlay-method Man page
labWork Man page
labWork,SpatialOverlay-method Man page
meta Man page
meta,SpatialPosition-method Man page
moveCoords Man page Source code
outline Man page
outline,SpatialOverlay-method Man page
overlay Man page
overlay,SpatialOverlay-method Man page
parseOverlayAttrs Man page Source code
parseScanMetadata Man page Source code
pencilCoordSorting Source code
physicalSizes Source code
plotFactors Man page
plotFactors,SpatialOverlay-method Man page
plotSpatialOverlay Man page Source code
position Man page
position,SpatialPosition-method Man page
readLabWorksheet Man page Source code
readSpatialOverlay Man page Source code
recolor Man page Source code
removeSample Man page Source code
res Man page
res,SpatialOverlay-method Man page
sampNames Man page
sampNames,SpatialOverlay-method Man page
scaleBarCalculation Source code
scaleBarMath Source code
scaleBarPrinting Source code
scaleBarRatio Man page
scaleBarRatio,SpatialOverlay-method Man page
scaleCoords Source code
scaled Man page
scaled,SpatialOverlay-method Man page
scanMeta Man page
scanMeta,SpatialOverlay-method Man page
seg Man page
seg,SpatialOverlay-method Man page
show,SpatialOverlay-method Man page
show,SpatialPosition-method Man page
showImage Man page
showImage,SpatialOverlay-method Man page
slideName Man page
slideName,SpatialOverlay-method Man page
spatialPos Man page
spatialPos,SpatialPosition-method Man page
themeTransparent Source code
workflow Man page
workflow,SpatialOverlay-method Man page
xmlExtraction Man page Source code
Nanostring-Biostats/SpatialOmicsOverlay documentation built on Dec. 18, 2024, 9:26 a.m.