plot_HRDetect_BootstrapScores: plot_HRDetect_BootstrapScores

In Nik-Zainal-Group/signature.tools.lib: signature.tools.lib

plot_HRDetect_BootstrapScores

Description

Overall plot of scores obtained from HRDetect with bootstrap. Plot will be in pdf format.

Usage

plot_HRDetect_BootstrapScores(
  outdir,
  hrdetect_res,
  main = "Distribution of HRDetect scores",
  mar = NULL,
  pwidth = NULL,
  pheight = NULL,
  pointsize = 12
)

Arguments

outdir	output directory for the plot
hrdetect_res	output of HRDetect_pipeline, ran with bootstrapHRDetectScores=TRUE
main	plot title. If not specified: "Distribution of HRDetect scores"
mar	plot margin. If not specified, this will be dynamically estimated based on sample names length
pwidth	plot width in pixels. If not specified, this will be dynamically estimated based on the number of samples
pheight	plot height in pixels. If not specified, this will be dynamically estimated based on sample names length
pointsize	plot resolution. If not specified: 12

Nik-Zainal-Group/signature.tools.lib documentation built on April 13, 2025, 5:50 p.m.