tnvTabToTNVcatalogue: Build a Trinucleotide Variants Catalogue from TNVs list
In Nik-Zainal-Group/signature.tools.lib: signature.tools.lib
View source: R/TrinucleotideVariantsLib.R
tnvTabToTNVcatalogue R Documentation
Build a Trinucleotide Variants Catalogue from TNVs list
Description
This function takes as input a list of trinucleotide variants (TNVs). It then
annotates the TNVs and computes the TNV catalogues.
The trinucleotide mutations considered are only those where all three bases change,
i.e. TTT>AAA but not TTT>ATA.
Usage
tnvTabToTNVcatalogue(tnvtab)
Arguments
tnvtab
requires columns Sample, Chrom, Pos, Ref, Alt, with Ref and Alt of length 3
Value
list of annotated TNVs and TNV catalogue
Nik-Zainal-Group/signature.tools.lib documentation built on April 13, 2025, 5:50 p.m.
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View source: R/TrinucleotideVariantsLib.R
| tnvTabToTNVcatalogue | R Documentation |
Build a Trinucleotide Variants Catalogue from TNVs list
Description
This function takes as input a list of trinucleotide variants (TNVs). It then annotates the TNVs and computes the TNV catalogues. The trinucleotide mutations considered are only those where all three bases change, i.e. TTT>AAA but not TTT>ATA.
Usage
tnvTabToTNVcatalogue(tnvtab)
Arguments
tnvtab |
requires columns Sample, Chrom, Pos, Ref, Alt, with Ref and Alt of length 3 |
Value
list of annotated TNVs and TNV catalogue
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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