clusterPlot: Clustering of the samples

In PF2-pasteur-fr/SARTools: Statistical Analysis of RNA-Seq Tools

Clustering of the samples

Description

Clustering of the samples based on VST- or rlog-counts (if use of DESeq2) or cpm-counts (if use of edgeR)

Usage

clusterPlot(counts.trans, group, outfile = TRUE, ggplot_theme = theme_gray())

Arguments

counts.trans	a matrix a transformed counts (VST- or rlog-counts if use of DESeq2 or cpm-counts if use of edgeR)
group	factor vector of the condition from which each sample belongs
outfile	TRUE to export the figure in a png file
ggplot_theme	ggplot2 theme function (theme_gray() by default)

Value

A file named cluster.png in the figures directory with the dendrogram of the clustering

Author(s)

Marie-Agnes Dillies and Hugo Varet

PF2-pasteur-fr/SARTools documentation built on April 6, 2022, 2:24 a.m.