majSequences: Most expressed sequences per sample

In PF2-pasteur-fr/SARTools: Statistical Analysis of RNA-Seq Tools

Most expressed sequences per sample

Description

Proportion of reads associated with the three most expressed sequences per sample

Usage

majSequences(
  counts,
  n = 3,
  group,
  col = c("lightblue", "orange", "MediumVioletRed", "SpringGreen"),
  outfile = TRUE,
  ggplot_theme = theme_gray()
)

Arguments

counts	matrix of counts
n	number of most expressed sequences to return
group	factor vector of the condition from which each sample belongs
col	colors of the bars (one per biological condition)
outfile	TRUE to export the figure in a png file
ggplot_theme	ggplot2 theme function (theme_gray() by default)

Value

A matrix with the percentage of reads of the three most expressed sequences and a file named majSeq.png in the figures directory

Author(s)

Marie-Agnes Dillies and Hugo Varet

PF2-pasteur-fr/SARTools documentation built on April 6, 2022, 2:24 a.m.