loadTargetFile: Load target file

In PF2-pasteur-fr/SARTools: Statistical Analysis of RNA-Seq Tools

Load target file

Description

Load the target file containing sample information

Usage

loadTargetFile(targetFile, varInt, condRef, batch)

Arguments

targetFile	path to the target file
varInt	variable on which sorting the target
condRef	reference condition of varInt
batch	batch effect to take into account

Details

The batch parameter is used only to check if it is available in the target file before running the suite of the script.

Value

A data.frame containing the informations about the samples (name, file containing the counts and biological condition)

Author(s)

Marie-Agnes Dillies and Hugo Varet

PF2-pasteur-fr/SARTools documentation built on April 6, 2022, 2:24 a.m.