densityPlot: Density plot of all samples

In PF2-pasteur-fr/SARTools: Statistical Analysis of RNA-Seq Tools

Density plot of all samples

Description

Estimation the counts density for each sample

Usage

densityPlot(
  counts,
  group,
  col = c("lightblue", "orange", "MediumVioletRed", "SpringGreen"),
  outfile = TRUE,
  ggplot_theme = theme_gray()
)

Arguments

counts	matrix of counts
group	factor vector of the condition from which each sample belongs
col	colors of the curves (one per biological condition)
outfile	TRUE to export the figure in a png file
ggplot_theme	ggplot2 theme function (theme_gray() by default)

Value

A file named densplot.png in the figures directory

Author(s)

Marie-Agnes Dillies and Hugo Varet

PF2-pasteur-fr/SARTools documentation built on April 6, 2022, 2:24 a.m.