dispersionsPlot: Plots about DESeq2 dispersions
In PF2-pasteur-fr/SARTools: Statistical Analysis of RNA-Seq Tools
View source: R/dispersionsPlot.R
dispersionsPlot R Documentation
Plots about DESeq2 dispersions
Description
A plot of the mean-dispersion relationship and a diagnostic of log normality of the dispersions (if use of DESeq2)
Usage
dispersionsPlot(dds, outfile = TRUE, ggplot_theme = theme_gray())
Arguments
dds
a DESeqDataSet object
outfile
TRUE to export the figure in a png file
ggplot_theme
ggplot2 theme function (theme_gray() by default)
Value
A file named dispersionsPlot.png in the figures directory containing the plot of the mean-dispersion relationship and a diagnostic of log normality of the dispersions
Author(s)
Marie-Agnes Dillies and Hugo Varet
PF2-pasteur-fr/SARTools documentation built on April 6, 2022, 2:24 a.m.
R Package Documentation
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View source: R/dispersionsPlot.R
| dispersionsPlot | R Documentation |
Plots about DESeq2 dispersions
Description
A plot of the mean-dispersion relationship and a diagnostic of log normality of the dispersions (if use of DESeq2)
Usage
dispersionsPlot(dds, outfile = TRUE, ggplot_theme = theme_gray())
Arguments
dds |
a |
outfile |
TRUE to export the figure in a png file |
ggplot_theme |
ggplot2 theme function ( |
Value
A file named dispersionsPlot.png in the figures directory containing the plot of the mean-dispersion relationship and a diagnostic of log normality of the dispersions
Author(s)
Marie-Agnes Dillies and Hugo Varet
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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